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Biophysics and Bioinformatics of Nucleic Acids

Selected publications


Primary research articles

Review articles


Primary research

  • H. Fernando, S. Sewitz, J. Darot, S. Tavaré, J.L. Huppert, and S. Balasubramanian
    Genome-wide analysis of a G-quadruplex-specific single-chain antibody that regulates gene expression
    Nucl. Ac. Res. (2009) In press
    link
  • K.J. Neaves, J.L. Huppert, R.M. Henderson and J. Michael Edwardson
    Direct visualization of G-quadruplexes in DNA using atomic force microscopy
    Nucl. Ac. Res. (2009) In press
    Link
  • O. Stegle, L. Payet, J.-L. Mergny, D.J.C. MacKay and J. L. Huppert
    Predicting and understanding the stability of G-quadruplexes
    Bioinformatics (2009) 25 i374-i382
    Link
  • H.M. Wong and J. L. Huppert
    Stable G-quadruplexes are found outside nucleosome-bound regions
    Mol. Biosyst. (2009) In press
    Link
  • J.L. Huppert, A. Bugaut, S. Kumari, S. Balasubramanian
    G-quadruplexes: the beginning and end of UTRs
    Nucl. Ac. Res. (2008) 36 6260-8
    Link
  • J.L. Huppert
    Thermodynamic prediction of RNA/DNA duplex-forming regions in the human genome
    Mol. BioSyst. (2008) 4 686-691
    Link
  • The ENCODE consortium
    The ENCODE pilot project: functional annotation of 1% of the human genome
    Nature (2007) 447 799-816
    Link
  • S. Kumari, A. Bugaut, J.L. Huppert, S. Balasubramanian
    An RNA G-quadruplex in the 5'-UTR of a proto-oncogene regulates translation
    Nat. Chem. Biol. (2007) 3 218-221
    Link. News and views article here.
  • J.L. Huppert and S. Balasubramanian
    G-quadruplexes in promoters throughout the human genome
    Nucl. Ac. Res. (2007) 35 406-413
    Link. Article in 'The Scientist' here
  • H. Fernando, A.P. Reszka, J.L. Huppert, S. Ladame, S. Rankin, A.R. Venkitaraman, S. Neidle and S. Balasubramanian
    A Conserved Quadruplex Motif Located in a Transcription Activation Site of the Human c-kit Oncogene
    Biochemistry (2006) 45 7854-7860
    Link
  • S. Rankin, A. P. Reszka, J.L. Huppert, M. Zloh, G. N. Parkinson, A. K. Todd, S. Ladame, S. Balasubramanian and S. Neidle
    Putative DNA quadruplex formation within the human c-kit oncogene
    J. Am. Chem. Soc. (2005) 127 10584-9
    Link
  • J.L. Huppert and S. Balasubramanian
    Prevalence of quadruplexes in the human genome
    Nucl. Ac. Res. (2005) 33 2908-2916
    Link
  • P. Hazel, J.L. Huppert, S. Balasubramanian and S. Neidle
    Loop-length-dependent folding of G-quadruplexes
    J. Am. Chem. Soc. (2004) 126 16405-15
    Link

Reviews

  • B.-S. Herbert, J.L. Huppert, F.B. Johnson, A.N. Lane and A.T. Phan
    Meeting report: Second international meeting on quadruplex DNA
    Biochimie (2009) 91 1059
    Link
  • A. Lister, V. Charoensawan, S. De, K. James, S.C. Janga and J. Huppert
    Interfacing systems biology and synthetic biology
    Genome Biology (2009) 10 309
    Link
  • H.M. Wong, L. Payet and J.L. Huppert
    Function and targeting of G-quadruplexes
    Curr. Op. Mol. Ther. (2009) 11 146-55
    Link
  • J.L. Huppert
    Four-stranded nucleic acids: structure, function and targeting of G-quadruplexes
    Chem. Soc. Rev. (2008) 37 1375-1384
    Link
  • J.L. Huppert
    Hunting G-quadruplexes
    Biochimie (2008) 90 1140-8
    Link
  • J.L. Huppert
    Four-stranded DNA: Cancer, gene regulation and drug development
    Phil Trans Roy Soc A, Triennial edition (2007) 365 2969-2984
    Link
  • J.L. Huppert
    Genomic Quadruplexes
    in Quadruplex Nucleic Acids (2006)
    S. Neidle and S. Balasubramanian Eds
    Royal Society of Chemistry publications, ISBN 0 85404 374 8
    Link